Modeling evolutionary processes goes way beyond the Hardy-Weinberg Equilibrium we all learned in biology class. Natural selection comes from many sources like resources availability, mate preferences, competition. Modeling entire populations of organisms of different species is the holy grail of digital evolution. Join our discussion with evolutionary biologist and software engineer Ben Haller to learn about his work on SLiM and how it helps other biologists model population genetics over time.

Modelling Evolution

It’s almost impossible to think about animal behavior without thinking of dogs! Our canine friends are a subspecies of wolf that has been co-evolving with us for tens of thousands of years. The transition from wolf to pet has required intense natural and artificial selection for behaviors that allow dogs to live alongside humans, but behavior is not so simple. Join us for a discussion with Dr. Jessica Hekman and learn about dog welfare, behavioral genetics, and the quest to understand the dogs in our lives.

Behavioral Genetics

In this episode, we are joined by Barbara Webb and Anna Hadjitofi. Barbara runs the Insect Robotics lab at the University of Edinburgh, and Anna is a PhD student at the School of Informatics at the university. She is interested in studying and understanding the neural mechanism of the honeybee waggle dance. They join us to discuss the paper: Dynamic antennal positioning allows honeybee followers to decode the dance.

Signal in the Noise

Many researchers and students have painstakingly labeled precise details about the body positions of the creatures they study. Can AI be used for this labeling? Of course it can! Today's episode discusses Social LEAP Estimates Animal Poses (SLEAP), a software solution to train AI to perform this tedious but important labeling work.

Pose Tracking

Our guest in this episode is Sebastien Motsch, an assistant professor at Arizona State University, working in the School of Mathematical and Statistical Science. He works on modeling self-organized biological systems to understand how complex patterns emerge.

Modeling Group Behavior

Our guest in this episode is Ryan Hanscom. Ryan is a Ph.D. candidate in a joint doctoral evolution program at San Diego State University and the University of California, Riverside. He is a terrestrial ecologist with a focus on herpetology and mammalogy.  Ryan discussed how the behavior of rattlesnakes is studied in the natural world, particularly with an increase in temperature.

Advances in Data Loggers

We are joined by Hank Schlinger, a professor of psychology at California State University, Los Angeles. His research revolves around theoretical issues in psychology and behavioral analysis.  Hank establishes that words have references and questions the reference for intelligence. He discussed how intelligence can be observed in animals. He also discussed how intelligence is measured in a given context.

What You Know About Intelligence is Wrong (fixed)

On today’s episode, we are joined by Aimee Dunlap. Aimee is an assistant professor at the University of Missouri–St. Louis and the interim director at the Whitney R. Harris World Ecology Center. Aimee discussed how animals perceive information and what they use it for. She discussed the connection between their environment and learning for decision-making. She also discussed the costs required for learning and factors that affect animal learning.

Animal Decision Making

We are joined by Tamar Gutnick, a visiting professor at the University of Naples Federico II, Napoli, Italy. She studies the octopus nervous system and their behavior, focusing on cognition and learning behaviors. Tamar gave a background to the kind of research she does — lab research. She discussed some challenges with observing octopuses in the lab. She discussed some patterns observed by the octopus lifestyle in a controlled setting. Tamar discussed what they know about octopus intelligence. She discussed the octopus nervous system and why they are unique compared to other animals. She discussed how they measure the behavior of octopuses using a video recording and a logger to track brain activity.

Octopus Cognition

Claire Hemmingway, an assistant professor in the Department of Psychology and Ecology and Evolutionary Biology at the University of Tennessee in Knoxville, is our guest today. Her research is on decision-making in animal cognition, focusing on neotropical bats and bumblebees. Claire discussed how bumblebees make foraging decisions and how they communicate when foraging. She discussed how they set up experiments in the lab to address questions about bumblebees foraging. She also discussed some nuances between bees in the lab and those in the wild. Claire discussed factors that drive an animal's foraging decisions. She explained the foraging theory and how a colony works together to optimize its foraging. She also touched on some irrational foraging behaviors she observed in her study. Claire discussed some techniques bees use to learn from past behaviors. She discussed the effect of climate change on foraging bees' learning behavior. Claire discussed how bats respond to calling frogs when foraging. She also spoke about choice overload in that they make detrimental decisions when loaded with too many options.

Optimal Foraging

On today’s show, we are joined by our co-host, Becky Hansis-O’Neil. Becky is a Ph.D. student at the University of Missouri, St Louis, where she studies bumblebees and tarantulas to understand their learning and cognitive work.   She joins us to discuss the paper: Perception in Chess. The paper aimed to understand how chess players perceive the positions of chess pieces on a chess board. She discussed the findings paper. She spoke about situations where grandmasters had better recall of chess positions than beginners and situations where they did not.   Becky and Kyle discussed the use of chess engines for cheating. They also discussed how chess players use chunking. Becky discussed some approaches to studying chess cognition, including eye tracking, EEG, and MRI.  ## Paper in Focus <a href= "https://www.sciencedirect.com/science/article/abs/pii/0010028573900042"> Perception in chess</a> ## Resources <a href= "https://dataskeptic.com/blog/episodes/2015/detecting-cheating-in-chess"> Detecting Cheating in Chess with Ken Regan</a>

Memory in Chess

On this episode, we are joined by Stephen Larson, the CEO of MetaCell and an affiliate of the OpenWorm foundation. Stephen discussed what the Openworm project is about. They hope to use a digital C. elegans nematode (C. elegans for short) to study the basics of life. Stephen discussed why C. elegans is an ideal organism for studying life in the lab. He also discussed the steps involved in simulating a digital organism. He mentioned the constraints on the cellular scale that informed their development of a digital C. elegans. Stephen discussed the validation process of the simulation. He discussed how they discovered the best parameters to capture the behavior of natural C. elegans. He also discussed how biologists embraced the project. Stephen discussed the computational requirements for improving the simulation parameters of the model and the kind of data they require to scale up. Stephen discussed some findings that the machine-learning communities can take away from the project. He also mentioned how students can get involved in the Openworm project. Rounding up, he shared future plans for the project.

OpenWorm

Our guest is Becky Hansis-O’Neil, a Ph.D. student at the University of Missouri, St Louis, and our co-host for the new "Animal Intelligence" season. Becky shares her background on how she got into the field of behavioral intelligence and biology.

What the Antlion Knows

Julian Michael, a postdoc at the Center for Data Science, New York University, joins us today. Julian’s conversation with Kyle was centered on the NLP community metasurvey: a survey aimed at understanding expert opinions on controversial NLP issues. He shared the process of preparing the survey as well as some shocking results.

Julian Michael, a postdoc at the Center for Data Science, New York University, joins us today. Julian’s conversation with Kyle was centered on the NLP community metasurvey: a survey aimed at understanding expert opinions on controversial NLP issues....

The NLP Community Metasurvey

Brian Taylor shares his research on magnetoreception. Animals like birds and sea turtles use magnetoreception to use the Earth’s magnetic field for navigation, but it’s not a sense that’s well understood. Brian uses animal magnetoreception to engineer new ways to navigate the globe. Even cooler, he also takes hypotheses for how magnetoreception works in animals and uses computational simulations to digitally test them. Check out this episode to hear more about Brian’s research and learn more about this little known sensory ability.

Brian Taylor shares his research on magnetoreception. Animals like birds and sea turtles use magnetoreception to use the Earth’s magnetic field for navigation, but it’s not a sense that’s well understood. Brian uses animal magnetoreception to...

Bioinspired Engineering

The NLP Community Metasurvey